Udemy Bioinformatics Learn Docking and Mol Dynamics Simulation
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| Torrent Added : | at Oct. 23, 2023, 12:45 a.m. in Other |
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Udemy Bioinformatics Learn Docking and Mol Dynamics Simulation
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Udemy Bioinformatics Learn Docking and Mol Dynamics Simulation
Get Bonus Downloads Here.url -
001 Important Massage from Instructors.mp4 -
001 Important Massage from Instructors_en.srt -
001 What is Protein.mp4 -
001 What is Protein_en.srt -
002 Experimental Techniques to Determine 3D Structure of Protein.mp4 -
002 Experimental Techniques to Determine 3D Structure of Protein_en.srt -
003 Practical-1 How To Download Protein Structure From Protein Databank.mp4 -
003 Practical-1 How To Download Protein Structure From Protein Databank_en.srt -
004 Practical-2 Visualization of 3D Structure of Protein Using Pymol.mp4 -
004 Practical-2 Visualization of 3D Structure of Protein Using Pymol_en.srt -
005 Fixing the Missing Residues in Protein 3D Structure Downloaded.mp4 -
005 Fixing the Missing Residues in Protein 3D Structure Downloaded_en.srt -
006 Practical-3 Fixing Missing Residues Issue With Modeller.mp4 -
006 Practical-3 Fixing Missing Residues Issue With Modeller_en.srt -
006 alignment.ali -
006 script1.py -
006 script2.py -
006 script3.py -
007 Intro to Protein 3D Structure Prediction.mp4 -
007 Intro to Protein 3D Structure Prediction_en.srt -
008 Modeller-access-in-MAC.mp4 -
008 Practical-4 How to Predict 3D Structure Using Modeller (Homology).mp4 -
008 Practical-4 How to Predict 3D Structure Using Modeller (Homology)_en.srt -
008 pdb-95.pir -
008 qseq1.ali -
008 script1.py -
008 script2.py -
008 script3.py -
008 script4.py -
008 script5.py -
008 tseq1.pdb -
008 tseq2.pdb -
008 tseq3.pdb -
008 tseq4.pdb -
009 Practical-5 How to Use I-TASSER for Prediction of 3D Structure.mp4 -
009 Practical-5 How to Use I-TASSER for Prediction of 3D Structure_en.srt -
010 Practical-6 Introduction of Alpha-Fold Database and Alpha-Fold Colab.mp4 -
010 Practical-6 Introduction of Alpha-Fold Database and Alpha-Fold Colab_en.srt -
001 Basic Introduction of Molecular Dynamic Simulations and its Steps.mp4 -
001 Basic Introduction of Molecular Dynamic Simulations and its Steps_en.srt -
002 Basic Theory of Molecular Dynamics Simulation (Part-1).mp4 -
002 Basic Theory of Molecular Dynamics Simulation (Part-1)_en.srt -
003 Basic Theory of Molecular Dynamics Simulation (Part-2).mp4 -
003 Basic Theory of Molecular Dynamics Simulation (Part-2)_en.srt -
004 Basic Theory of Molecular Dynamics Simulation (Part-3).mp4 -
004 Basic Theory of Molecular Dynamics Simulation (Part-3)_en.srt -
005 Basic Theory of Molecular Dynamics Simulation (Part-4).mp4 -
005 Basic Theory of Molecular Dynamics Simulation (Part-4)_en.srt -
006 MD (Molecular Dynamics Simulation) Cycle.mp4 -
006 MD (Molecular Dynamics Simulation) Cycle_en.srt -
007 Basic Steps of Molecular Dynamics Simulations.mp4 -
007 Basic Steps of Molecular Dynamics Simulations_en.srt -
008 Protein Structure Preparation for Molecular Dynamics Simulations.mp4 -
008 Protein Structure Preparation for Molecular Dynamics Simulations_en.srt -
009 Preparation of Topology File for Molecular Dynamics Simulations.mp4 -
009 Preparation of Topology File for Molecular Dynamics Simulations_en.srt -
010 Solvation and Ionization of System.mp4 -
010 Solvation and Ionization of System_en.srt -
011 Energy Minimization (EM) of System.mp4 -
011 Energy Minimization (EM) of System_en.srt -
012 Equilibration and Production Phase of Molecular Dynamics Simulation.mp4 -
012 Equilibration and Production Phase of Molecular Dynamics Simulation_en.srt -
001 Basic Type of Operating System Available in Market.mp4 -
001 Basic Type of Operating System Available in Market_en.srt -
002 Features of Linux Operating System.mp4 -
002 Features of Linux Operating System_en.srt -
003 Terminal of Linux Operating System.mp4 -
003 Terminal of Linux Operating System_en.srt -
004 Some Basic Commands for Linux Operating System.mp4 -
004 Some Basic Commands for Linux Operating System_en.srt -
005 What's Next.mp4 -
005 What's Next_en.srt -
001 Practical-7 Installation of Linux in Windows Environment.mp4 -
001 Practical-7 Installation of Linux in Windows Environment_en.srt -
002 Commands-to-Install-GROMACS-Using-Linux-Terminal.pdf -
002 Practical-8 Installation of GROMACS.mp4 -
002 Practical-8 Installation of GROMACS_en.srt -
003 Modules of GROMACS Used in Molecular Dynamics Tutorial.mp4 -
003 Modules of GROMACS Used in Molecular Dynamics Tutorial_en.srt -
004 Work Flow of Molecular Dynamics in GROMACS.mp4 -
004 Work Flow of Molecular Dynamics in GROMACS_en.srt -
005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations.mp4 -
005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations_en.srt -
006 Commands to Run Molecular Dynamics Simulations (For You).mp4 -
006 Commands to Run Molecular Dynamics Simulations (For You)_en.srt -
006 Commands-to-run-MD-simulation-of-Protein-in-Water.pdf -
007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations.mp4 -
007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations_en.srt -
008 Practical-11 Creation of Topology File In GROMACS.mp4 -
008 Practical-11 Creation of Topology File In GROMACS_en.srt -
009 Practical-12 Solvation of Step in Molecular Dynamics Simulation.mp4 -
009 Practical-12 Solvation of Step in Molecular Dynamics Simulation_en.srt -
010 Practical-13 Ionization Step in Molecular Dynamics Simulation.mp4 -
010 Practical-13 Ionization Step in Molecular Dynamics Simulation_en.srt -
010 ions.mdp -
011 Practical-14 Energy Minimization (EM) in GROMACS.mp4 -
011 Practical-14 Energy Minimization (EM) in GROMACS_en.srt -
011 minim.mdp -
012 Practical-15 Equilibration Phase-I (Part-A).mp4 -
012 Practical-15 Equilibration Phase-I (Part-A)_en.srt -
012 nvt.mdp -
013 Practical-16 Equilibration Phase-I (Part-B).mp4 -
013 Practical-16 Equilibration Phase-I (Part-B)_en.srt -
014 Practical-17 Equilibration Phase-II (Part-A).mp4 -
014 Practical-17 Equilibration Phase-II (Part-A)_en.srt -
014 npt.mdp -
015 Practical-18 Equilibration Phase-II (Part-B).mp4 -
015 Practical-18 Equilibration Phase-II (Part-B)_en.srt -
016 Understanding md.mdp File Before Final Phase.mp4 -
016 Understanding md.mdp File Before Final Phase_en.srt -
017 Practical-19 Running Molecular Dynamics Simulation Final Phase.mp4 -
017 Practical-19 Running Molecular Dynamics Simulation Final Phase_en.srt -
017 md.mdp -
018 Basic Theory of Molecular Dynamics Simulation Data Analysis.mp4 -
018 Basic Theory of Molecular Dynamics Simulation Data Analysis_en.srt -
019 Commands for Analysis of Molecular Dynamics Simulation Data.mp4 -
019 Commands for Analysis of Molecular Dynamics Simulation Data_en.srt -
019 Commands-to-Analyze-the-MD-Data.pdf -
020 Bringing the Protein in Center Before Data Analysis.mp4 -
020 Bringing the Protein in Center Before Data Analysis_en.srt -
021 Practical-20 Calculation of RMSD.mp4 -
021 Practical-20 Calculation of RMSD_en.srt -
022 Practical-21 Calculation of RMSF.mp4 -
022 Practical-21 Calculation of RMSF_en.srt -
023 Practical-22 Calculation of Radius of Gyration (Rg).mp4 -
023 Practical-22 Calculation of Radius of Gyration (Rg)_en.srt -
024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb).mp4 -
024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb)_en.srt -
025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA).mp4 -
025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA)_en.srt -
026 Practical-25 Opening of XVG Files in Excel.mp4 -
026 Practical-25 Opening of XVG Files in Excel_en.srt -
027 Practical-25.1 Visualization of MD Trajectory in Pymol.mp4 -
027 Practical-25.1 Visualization of MD Trajectory in Pymol_en.srt -
001 Introduction of Docking-Part-1.mp4 -
001 Introduction of Docking-Part-1_en.srt -
002 Introduction of Docking-Part-2.mp4 -
002 Introduction of Docking-Part-2_en.srt -
003 Sampling Algorithms-Part-1.mp4 -
003 Sampling Algorithms-Part-1_en.srt -
004 Sampling Algorithms-Part-2.mp4 -
004 Sampling Algorithms-Part-2_en.srt -
005 Sampling Algorithms-Part-3.mp4 -
005 Sampling Algorithms-Part-3_en.srt -
006 Sampling Algorithms-Part-4.mp4 -
006 Sampling Algorithms-Part-4_en.srt -
007 Scoring Algorithms.mp4 -
007 Scoring Algorithms_en.srt -
008 Types of Docking.mp4 -
008 Types of Docking_en.srt -
009 Basic Steps in Docking Protocol.mp4 -
009 Basic Steps in Docking Protocol_en.srt -
010 Theory of Docking Steps-Part-1.mp4 -
010 Theory of Docking Steps-Part-1_en.srt -
011 Theory of Docking Steps-Part-2.mp4 -
011 Theory of Docking Steps-Part-2_en.srt -
012 MD-3-Installation-of-Docking-Software-10-Silent.txt -
012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid.mp4 -
012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid_en.srt -
013 MD-3-Installation-of-Ligand-Software-11-Silent.txt -
013 Practical-27 Installation of Ligand Drawing Tools.mp4 -
013 Practical-27 Installation of Ligand Drawing Tools_en.srt -
014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking.mp4 -
014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking_en.srt -
015 Issue With Protein Structure Preparation in MGL Tools.mp4 -
015 Issue With Protein Structure Preparation in MGL Tools_en.srt -
016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database.mp4 -
016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database_en.srt -
017 Practical-30 Drawing of Ligand Structure in ChemSketch.mp4 -
017 Practical-30 Drawing of Ligand Structure in ChemSketch_en.srt -
018 Practical-31 Preparation of Ligand Molecule for Docking.mp4 -
018 Practical-31 Preparation of Ligand Molecule for Docking_en.srt -
018 ligand.pdb -
019 Practical-32 Prediction of Active Site of Protein.mp4 -
019 Practical-32 Prediction of Active Site of Protein_en.srt -
020 Practical-33 Setting Grid.mp4 -
020 Practical-33 Setting Grid_en.srt -
021 Very Important Step; Be Careful Here.mp4 -
021 Very Important Step; Be Careful Here_en.srt -
022 Practical-34 (Part-A) Performing Docking with Vina.mp4 -
022 Practical-34 (Part-A) Performing Docking with Vina_en.srt -
022 conf.txt -
023 Practical-34 (Part-B) Visualization of Vina Docking Data.mp4 -
023 Practical-34 (Part-B) Visualization of Vina Docking Data_en.srt -
024 Practical-35 (Part-A) Performing Docking Using AutoDock4.mp4 -
024 Practical-35 (Part-A) Performing Docking Using AutoDock4_en.srt -
025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results.mp4 -
025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results_en.srt -
026 Practical-33 Preforming Docking with CB Dock.mp4 -
026 Practical-33 Preforming Docking with CB Dock_en.srt -
027 Practical-34 Analyzing the Docking Data.mp4 -
027 Practical-34 Analyzing the Docking Data_en.srt -
028 Practical-35 PatchDock; Shape Complementary Docking Program.mp4 -
028 Practical-35 PatchDock; Shape Complementary Docking Program_en.srt -
001 Biggest Drawback of Conventional Docking Protocol.mp4 -
001 Biggest Drawback of Conventional Docking Protocol_en.srt -
002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations.mp4 -
002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations_en.srt -
003 Basic Steps of Protein-Ligand MD Simulations.mp4 -
003 Basic Steps of Protein-Ligand MD Simulations_en.srt -
004 Practical-36 Very First Step; Preparation of Protein and Ligand.mp4 -
004 Practical-36 Very First Step; Preparation of Protein and Ligand_en.srt -
005 Practical-37 Necessary Files Needed For Molecular Dynamics Simulations.mp4 -
005 Practical-37 Necessary Files Needed For Molecular Dynamics Simulations_en.srt -
005 cgenff-charmm2gmx.py -
005 em.mdp -
005 ie.mdp -
005 ions.mdp -
005 md.mdp -
005 npt.mdp -
005 nvt.mdp -
005 sort-mol2-bonds.pl -
006 Commands to Run Ligand-Protein Molecular Dynamics Simulations.mp4 -
006 Commands to Run Ligand-Protein Molecular Dynamics Simulations_en.srt -
006 Commands-for-MD-Ligand-Protein-Complex.pdf -
007 Practical-38 Preparation of Protein Topology File.mp4 -
007 Practical-38 Preparation of Protein Topology File_en.srt -
008 Practical-39 Preparation of Ligand Topology File.mp4 -
008 Practical-39 Preparation of Ligand Topology File_en.srt -
009 Practical-40 Making Complex.mp4 -
009 Practical-40 Making Complex_en.srt -
010 Practical-41 Solvation, Ionization & Energy Minimization of Complex.mp4 -
010 Practical-41 Solvation, Ionization & Energy Minimization of Complex_en.srt -
011 Practical-42 Ligand Restrain.mp4 -
011 Practical-42 Ligand Restrain_en.srt -
012 Practical-43 Thermostats.mp4 -
012 Practical-43 Thermostats_en.srt -
013 Practical-44 Equilibration.mp4 -
013 Practical-44 Equilibration_en.srt -
014 Practical-44 Production Phase.mp4 -
014 Practical-44 Production Phase_en.srt -
015 Commands-to-Analyze-the-Molecular-Dynamics-Simulation-Data-of-Ligand-Protein-Complex.pdf -
015 Practical-44 Analysis.mp4 -
015 Practical-44 Analysis_en.srt -
001 Importance of Virtual Screening.mp4 -
001 Importance of Virtual Screening_en.srt -
002 Introduction to Virtual Screening.mp4 -
002 Introduction to Virtual Screening_en.srt -
003 Fundamental Steps of Virtual Screening.mp4 -
003 Fundamental Steps of Virtual Screening_en.srt -
004 Commands Needed to Run Virtual Screening.mp4 -
004 Commands Needed to Run Virtual Screening_en.srt -
004 Commands-to-Run-Vina-for-Virtual-Screening-in-Linux-Environment.pdf -
005 Practical-46 Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu).mp4 -
005 Practical-46 Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu)_en.srt -
006 Practical-47 Preparation of Protein Receptor for Virtual Screening.mp4 -
006 Practical-47 Preparation of Protein Receptor for Virtual Screening_en.srt -
007 Practical-48 Downloading of Thousands of Ligands in One Click.mp4 -
007 Practical-48 Downloading of Thousands of Ligands in One Click_en.srt -
008 Practical-49 Preparation of Ligands for Docking.mp4 -
008 Practical-49 Preparation of Ligands for Docking_en.srt -
009 Practical-50 Setting Grid and Writing of Configuration File.mp4 -
009 Practical-50 Setting Grid and Writing of Configuration File_en.srt -
010 Practical-51 Docking of Ligands with Receptors in Vina.mp4 -
010 Practical-51 Docking of Ligands with Receptors in Vina_en.srt -
010 Vina-linux.pl -
011 Practical-52 Analysis.mp4 -
011 Practical-52 Analysis_en.srt -
001 Protein Databank Update.mp4 -
001 Protein Databank Update_en.srt -
Bonus Resources.txt -
Please login or create a FREE account to post comments
Get Bonus Downloads Here.url -
182 bytes
001 Important Massage from Instructors.mp4 -
4.3 MB
001 Important Massage from Instructors_en.srt -
1.0 KB
001 What is Protein.mp4 -
51.3 MB
001 What is Protein_en.srt -
7.8 KB
002 Experimental Techniques to Determine 3D Structure of Protein.mp4 -
4.6 MB
002 Experimental Techniques to Determine 3D Structure of Protein_en.srt -
2.7 KB
003 Practical-1 How To Download Protein Structure From Protein Databank.mp4 -
90.0 MB
003 Practical-1 How To Download Protein Structure From Protein Databank_en.srt -
17.6 KB
004 Practical-2 Visualization of 3D Structure of Protein Using Pymol.mp4 -
35.6 MB
004 Practical-2 Visualization of 3D Structure of Protein Using Pymol_en.srt -
9.1 KB
005 Fixing the Missing Residues in Protein 3D Structure Downloaded.mp4 -
16.0 MB
005 Fixing the Missing Residues in Protein 3D Structure Downloaded_en.srt -
3.2 KB
006 Practical-3 Fixing Missing Residues Issue With Modeller.mp4 -
102.1 MB
006 Practical-3 Fixing Missing Residues Issue With Modeller_en.srt -
22.1 KB
006 alignment.ali -
1.5 KB
006 script1.py -
240 bytes
006 script2.py -
464 bytes
006 script3.py -
553 bytes
007 Intro to Protein 3D Structure Prediction.mp4 -
2.4 MB
007 Intro to Protein 3D Structure Prediction_en.srt -
2.0 KB
008 Modeller-access-in-MAC.mp4 -
9.4 MB
008 Practical-4 How to Predict 3D Structure Using Modeller (Homology).mp4 -
259.7 MB
008 Practical-4 How to Predict 3D Structure Using Modeller (Homology)_en.srt -
35.4 KB
008 pdb-95.pir -
4.8 MB
008 qseq1.ali -
1.1 KB
008 script1.py -
1.3 KB
008 script2.py -
469 bytes
008 script3.py -
383 bytes
008 script4.py -
410 bytes
008 script5.py -
527 bytes
008 tseq1.pdb -
640.2 KB
008 tseq2.pdb -
640.2 KB
008 tseq3.pdb -
640.2 KB
008 tseq4.pdb -
640.2 KB
009 Practical-5 How to Use I-TASSER for Prediction of 3D Structure.mp4 -
121.9 MB
009 Practical-5 How to Use I-TASSER for Prediction of 3D Structure_en.srt -
15.0 KB
010 Practical-6 Introduction of Alpha-Fold Database and Alpha-Fold Colab.mp4 -
28.9 MB
010 Practical-6 Introduction of Alpha-Fold Database and Alpha-Fold Colab_en.srt -
7.5 KB
001 Basic Introduction of Molecular Dynamic Simulations and its Steps.mp4 -
14.9 MB
001 Basic Introduction of Molecular Dynamic Simulations and its Steps_en.srt -
1.5 KB
002 Basic Theory of Molecular Dynamics Simulation (Part-1).mp4 -
5.0 MB
002 Basic Theory of Molecular Dynamics Simulation (Part-1)_en.srt -
2.9 KB
003 Basic Theory of Molecular Dynamics Simulation (Part-2).mp4 -
7.4 MB
003 Basic Theory of Molecular Dynamics Simulation (Part-2)_en.srt -
4.3 KB
004 Basic Theory of Molecular Dynamics Simulation (Part-3).mp4 -
6.4 MB
004 Basic Theory of Molecular Dynamics Simulation (Part-3)_en.srt -
3.8 KB
005 Basic Theory of Molecular Dynamics Simulation (Part-4).mp4 -
6.0 MB
005 Basic Theory of Molecular Dynamics Simulation (Part-4)_en.srt -
2.3 KB
006 MD (Molecular Dynamics Simulation) Cycle.mp4 -
7.9 MB
006 MD (Molecular Dynamics Simulation) Cycle_en.srt -
2.7 KB
007 Basic Steps of Molecular Dynamics Simulations.mp4 -
1.6 MB
007 Basic Steps of Molecular Dynamics Simulations_en.srt -
894 bytes
008 Protein Structure Preparation for Molecular Dynamics Simulations.mp4 -
8.2 MB
008 Protein Structure Preparation for Molecular Dynamics Simulations_en.srt -
3.9 KB
009 Preparation of Topology File for Molecular Dynamics Simulations.mp4 -
5.3 MB
009 Preparation of Topology File for Molecular Dynamics Simulations_en.srt -
2.9 KB
010 Solvation and Ionization of System.mp4 -
20.0 MB
010 Solvation and Ionization of System_en.srt -
1.6 KB
011 Energy Minimization (EM) of System.mp4 -
2.7 MB
011 Energy Minimization (EM) of System_en.srt -
1.8 KB
012 Equilibration and Production Phase of Molecular Dynamics Simulation.mp4 -
16.7 MB
012 Equilibration and Production Phase of Molecular Dynamics Simulation_en.srt -
1.9 KB
001 Basic Type of Operating System Available in Market.mp4 -
4.2 MB
001 Basic Type of Operating System Available in Market_en.srt -
2.5 KB
002 Features of Linux Operating System.mp4 -
4.8 MB
002 Features of Linux Operating System_en.srt -
2.8 KB
003 Terminal of Linux Operating System.mp4 -
1.5 MB
003 Terminal of Linux Operating System_en.srt -
1.1 KB
004 Some Basic Commands for Linux Operating System.mp4 -
26.8 MB
004 Some Basic Commands for Linux Operating System_en.srt -
4.6 KB
005 What's Next.mp4 -
4.2 MB
005 What's Next_en.srt -
2.4 KB
001 Practical-7 Installation of Linux in Windows Environment.mp4 -
30.3 MB
001 Practical-7 Installation of Linux in Windows Environment_en.srt -
6.0 KB
002 Commands-to-Install-GROMACS-Using-Linux-Terminal.pdf -
91.9 KB
002 Practical-8 Installation of GROMACS.mp4 -
42.0 MB
002 Practical-8 Installation of GROMACS_en.srt -
6.7 KB
003 Modules of GROMACS Used in Molecular Dynamics Tutorial.mp4 -
4.5 MB
003 Modules of GROMACS Used in Molecular Dynamics Tutorial_en.srt -
3.4 KB
004 Work Flow of Molecular Dynamics in GROMACS.mp4 -
15.1 MB
004 Work Flow of Molecular Dynamics in GROMACS_en.srt -
5.6 KB
005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations.mp4 -
19.4 MB
005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations_en.srt -
5.0 KB
006 Commands to Run Molecular Dynamics Simulations (For You).mp4 -
3.6 MB
006 Commands to Run Molecular Dynamics Simulations (For You)_en.srt -
1.6 KB
006 Commands-to-run-MD-simulation-of-Protein-in-Water.pdf -
87.6 KB
007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations.mp4 -
16.6 MB
007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations_en.srt -
5.9 KB
008 Practical-11 Creation of Topology File In GROMACS.mp4 -
49.4 MB
008 Practical-11 Creation of Topology File In GROMACS_en.srt -
7.0 KB
009 Practical-12 Solvation of Step in Molecular Dynamics Simulation.mp4 -
41.1 MB
009 Practical-12 Solvation of Step in Molecular Dynamics Simulation_en.srt -
6.6 KB
010 Practical-13 Ionization Step in Molecular Dynamics Simulation.mp4 -
34.0 MB
010 Practical-13 Ionization Step in Molecular Dynamics Simulation_en.srt -
8.3 KB
010 ions.mdp -
1.0 KB
011 Practical-14 Energy Minimization (EM) in GROMACS.mp4 -
48.5 MB
011 Practical-14 Energy Minimization (EM) in GROMACS_en.srt -
6.9 KB
011 minim.mdp -
1.0 KB
012 Practical-15 Equilibration Phase-I (Part-A).mp4 -
21.9 MB
012 Practical-15 Equilibration Phase-I (Part-A)_en.srt -
7.6 KB
012 nvt.mdp -
2.4 KB
013 Practical-16 Equilibration Phase-I (Part-B).mp4 -
15.0 MB
013 Practical-16 Equilibration Phase-I (Part-B)_en.srt -
3.0 KB
014 Practical-17 Equilibration Phase-II (Part-A).mp4 -
24.2 MB
014 Practical-17 Equilibration Phase-II (Part-A)_en.srt -
3.1 KB
014 npt.mdp -
2.6 KB
015 Practical-18 Equilibration Phase-II (Part-B).mp4 -
14.6 MB
015 Practical-18 Equilibration Phase-II (Part-B)_en.srt -
4.3 KB
016 Understanding md.mdp File Before Final Phase.mp4 -
12.7 MB
016 Understanding md.mdp File Before Final Phase_en.srt -
2.8 KB
017 Practical-19 Running Molecular Dynamics Simulation Final Phase.mp4 -
13.5 MB
017 Practical-19 Running Molecular Dynamics Simulation Final Phase_en.srt -
5.2 KB
017 md.mdp -
2.7 KB
018 Basic Theory of Molecular Dynamics Simulation Data Analysis.mp4 -
14.3 MB
018 Basic Theory of Molecular Dynamics Simulation Data Analysis_en.srt -
8.1 KB
019 Commands for Analysis of Molecular Dynamics Simulation Data.mp4 -
7.6 MB
019 Commands for Analysis of Molecular Dynamics Simulation Data_en.srt -
1.1 KB
019 Commands-to-Analyze-the-MD-Data.pdf -
66.9 KB
020 Bringing the Protein in Center Before Data Analysis.mp4 -
8.1 MB
020 Bringing the Protein in Center Before Data Analysis_en.srt -
4.9 KB
021 Practical-20 Calculation of RMSD.mp4 -
11.4 MB
021 Practical-20 Calculation of RMSD_en.srt -
4.2 KB
022 Practical-21 Calculation of RMSF.mp4 -
10.8 MB
022 Practical-21 Calculation of RMSF_en.srt -
3.5 KB
023 Practical-22 Calculation of Radius of Gyration (Rg).mp4 -
9.6 MB
023 Practical-22 Calculation of Radius of Gyration (Rg)_en.srt -
3.1 KB
024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb).mp4 -
6.8 MB
024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb)_en.srt -
3.7 KB
025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA).mp4 -
22.6 MB
025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA)_en.srt -
3.3 KB
026 Practical-25 Opening of XVG Files in Excel.mp4 -
40.6 MB
026 Practical-25 Opening of XVG Files in Excel_en.srt -
7.1 KB
027 Practical-25.1 Visualization of MD Trajectory in Pymol.mp4 -
36.5 MB
027 Practical-25.1 Visualization of MD Trajectory in Pymol_en.srt -
5.0 KB
001 Introduction of Docking-Part-1.mp4 -
3.2 MB
001 Introduction of Docking-Part-1_en.srt -
1.7 KB
002 Introduction of Docking-Part-2.mp4 -
3.0 MB
002 Introduction of Docking-Part-2_en.srt -
1.8 KB
003 Sampling Algorithms-Part-1.mp4 -
1.9 MB
003 Sampling Algorithms-Part-1_en.srt -
881 bytes
004 Sampling Algorithms-Part-2.mp4 -
1.6 MB
004 Sampling Algorithms-Part-2_en.srt -
1.3 KB
005 Sampling Algorithms-Part-3.mp4 -
16.4 MB
005 Sampling Algorithms-Part-3_en.srt -
1.5 KB
006 Sampling Algorithms-Part-4.mp4 -
7.9 MB
006 Sampling Algorithms-Part-4_en.srt -
4.0 KB
007 Scoring Algorithms.mp4 -
5.7 MB
007 Scoring Algorithms_en.srt -
3.6 KB
008 Types of Docking.mp4 -
2.8 MB
008 Types of Docking_en.srt -
2.1 KB
009 Basic Steps in Docking Protocol.mp4 -
8.0 MB
009 Basic Steps in Docking Protocol_en.srt -
1.9 KB
010 Theory of Docking Steps-Part-1.mp4 -
7.0 MB
010 Theory of Docking Steps-Part-1_en.srt -
4.2 KB
011 Theory of Docking Steps-Part-2.mp4 -
5.6 MB
011 Theory of Docking Steps-Part-2_en.srt -
3.7 KB
012 MD-3-Installation-of-Docking-Software-10-Silent.txt -
366 bytes
012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid.mp4 -
23.0 MB
012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid_en.srt -
6.4 KB
013 MD-3-Installation-of-Ligand-Software-11-Silent.txt -
170 bytes
013 Practical-27 Installation of Ligand Drawing Tools.mp4 -
12.7 MB
013 Practical-27 Installation of Ligand Drawing Tools_en.srt -
5.2 KB
014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking.mp4 -
67.6 MB
014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking_en.srt -
14.4 KB
015 Issue With Protein Structure Preparation in MGL Tools.mp4 -
6.9 MB
015 Issue With Protein Structure Preparation in MGL Tools_en.srt -
2.4 KB
016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database.mp4 -
33.4 MB
016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database_en.srt -
9.5 KB
017 Practical-30 Drawing of Ligand Structure in ChemSketch.mp4 -
62.2 MB
017 Practical-30 Drawing of Ligand Structure in ChemSketch_en.srt -
14.9 KB
018 Practical-31 Preparation of Ligand Molecule for Docking.mp4 -
54.5 MB
018 Practical-31 Preparation of Ligand Molecule for Docking_en.srt -
10.5 KB
018 ligand.pdb -
6.6 KB
019 Practical-32 Prediction of Active Site of Protein.mp4 -
38.2 MB
019 Practical-32 Prediction of Active Site of Protein_en.srt -
5.4 KB
020 Practical-33 Setting Grid.mp4 -
50.1 MB
020 Practical-33 Setting Grid_en.srt -
8.8 KB
021 Very Important Step; Be Careful Here.mp4 -
15.8 MB
021 Very Important Step; Be Careful Here_en.srt -
2.7 KB
022 Practical-34 (Part-A) Performing Docking with Vina.mp4 -
29.7 MB
022 Practical-34 (Part-A) Performing Docking with Vina_en.srt -
10.8 KB
022 conf.txt -
182 bytes
023 Practical-34 (Part-B) Visualization of Vina Docking Data.mp4 -
24.6 MB
023 Practical-34 (Part-B) Visualization of Vina Docking Data_en.srt -
6.0 KB
024 Practical-35 (Part-A) Performing Docking Using AutoDock4.mp4 -
83.0 MB
024 Practical-35 (Part-A) Performing Docking Using AutoDock4_en.srt -
12.4 KB
025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results.mp4 -
21.1 MB
025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results_en.srt -
6.9 KB
026 Practical-33 Preforming Docking with CB Dock.mp4 -
26.4 MB
026 Practical-33 Preforming Docking with CB Dock_en.srt -
9.2 KB
027 Practical-34 Analyzing the Docking Data.mp4 -
60.9 MB
027 Practical-34 Analyzing the Docking Data_en.srt -
13.1 KB
028 Practical-35 PatchDock; Shape Complementary Docking Program.mp4 -
80.1 MB
028 Practical-35 PatchDock; Shape Complementary Docking Program_en.srt -
10.5 KB
001 Biggest Drawback of Conventional Docking Protocol.mp4 -
5.1 MB
001 Biggest Drawback of Conventional Docking Protocol_en.srt -
2.0 KB
002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations.mp4 -
1.4 MB
002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations_en.srt -
1.2 KB
003 Basic Steps of Protein-Ligand MD Simulations.mp4 -
3.3 MB
003 Basic Steps of Protein-Ligand MD Simulations_en.srt -
1.8 KB
004 Practical-36 Very First Step; Preparation of Protein and Ligand.mp4 -
29.9 MB
004 Practical-36 Very First Step; Preparation of Protein and Ligand_en.srt -
3.9 KB
005 Practical-37 Necessary Files Needed For Molecular Dynamics Simulations.mp4 -
9.1 MB
005 Practical-37 Necessary Files Needed For Molecular Dynamics Simulations_en.srt -
3.3 KB
005 cgenff-charmm2gmx.py -
37.0 KB
005 em.mdp -
1.1 KB
005 ie.mdp -
2.6 KB
005 ions.mdp -
1.0 KB
005 md.mdp -
2.6 KB
005 npt.mdp -
2.7 KB
005 nvt.mdp -
2.4 KB
005 sort-mol2-bonds.pl -
3.4 KB
006 Commands to Run Ligand-Protein Molecular Dynamics Simulations.mp4 -
3.0 MB
006 Commands to Run Ligand-Protein Molecular Dynamics Simulations_en.srt -
1.4 KB
006 Commands-for-MD-Ligand-Protein-Complex.pdf -
82.0 KB
007 Practical-38 Preparation of Protein Topology File.mp4 -
31.7 MB
007 Practical-38 Preparation of Protein Topology File_en.srt -
5.8 KB
008 Practical-39 Preparation of Ligand Topology File.mp4 -
35.6 MB
008 Practical-39 Preparation of Ligand Topology File_en.srt -
7.9 KB
009 Practical-40 Making Complex.mp4 -
40.9 MB
009 Practical-40 Making Complex_en.srt -
8.6 KB
010 Practical-41 Solvation, Ionization & Energy Minimization of Complex.mp4 -
18.9 MB
010 Practical-41 Solvation, Ionization & Energy Minimization of Complex_en.srt -
6.1 KB
011 Practical-42 Ligand Restrain.mp4 -
31.5 MB
011 Practical-42 Ligand Restrain_en.srt -
7.5 KB
012 Practical-43 Thermostats.mp4 -
8.4 MB
012 Practical-43 Thermostats_en.srt -
2.9 KB
013 Practical-44 Equilibration.mp4 -
22.4 MB
013 Practical-44 Equilibration_en.srt -
5.5 KB
014 Practical-44 Production Phase.mp4 -
18.8 MB
014 Practical-44 Production Phase_en.srt -
3.3 KB
015 Commands-to-Analyze-the-Molecular-Dynamics-Simulation-Data-of-Ligand-Protein-Complex.pdf -
64.4 KB
015 Practical-44 Analysis.mp4 -
59.7 MB
015 Practical-44 Analysis_en.srt -
9.1 KB
001 Importance of Virtual Screening.mp4 -
23.3 MB
001 Importance of Virtual Screening_en.srt -
1.8 KB
002 Introduction to Virtual Screening.mp4 -
17.0 MB
002 Introduction to Virtual Screening_en.srt -
3.7 KB
003 Fundamental Steps of Virtual Screening.mp4 -
6.5 MB
003 Fundamental Steps of Virtual Screening_en.srt -
4.6 KB
004 Commands Needed to Run Virtual Screening.mp4 -
1.6 MB
004 Commands Needed to Run Virtual Screening_en.srt -
923 bytes
004 Commands-to-Run-Vina-for-Virtual-Screening-in-Linux-Environment.pdf -
69.4 KB
005 Practical-46 Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu).mp4 -
25.0 MB
005 Practical-46 Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu)_en.srt -
5.5 KB
006 Practical-47 Preparation of Protein Receptor for Virtual Screening.mp4 -
11.2 MB
006 Practical-47 Preparation of Protein Receptor for Virtual Screening_en.srt -
3.4 KB
007 Practical-48 Downloading of Thousands of Ligands in One Click.mp4 -
43.1 MB
007 Practical-48 Downloading of Thousands of Ligands in One Click_en.srt -
7.3 KB
008 Practical-49 Preparation of Ligands for Docking.mp4 -
24.9 MB
008 Practical-49 Preparation of Ligands for Docking_en.srt -
11.7 KB
009 Practical-50 Setting Grid and Writing of Configuration File.mp4 -
7.2 MB
009 Practical-50 Setting Grid and Writing of Configuration File_en.srt -
3.7 KB
010 Practical-51 Docking of Ligands with Receptors in Vina.mp4 -
27.8 MB
010 Practical-51 Docking of Ligands with Receptors in Vina_en.srt -
6.4 KB
010 Vina-linux.pl -
409 bytes
011 Practical-52 Analysis.mp4 -
11.9 MB
011 Practical-52 Analysis_en.srt -
2.2 KB
001 Protein Databank Update.mp4 -
46.1 MB
001 Protein Databank Update_en.srt -
6.3 KB
Bonus Resources.txt -
386 bytes
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